How do we compare?

MFold

Zuker, M. "Mfold web server for nucleic acid folding and hybridization prediction," Nucleic Acids Research, 2003, 31, 3406 - 3415
Mathews, D.H.; Sabina, J.; Zuker, M. & Turner, D.H. "Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure ," Journal of Molecular Biology, 1999, 288, 911-940


NAVRNA

Bailly, G.; Nigay, L. & Auber, D. "NAVRNA: visualization - exploration - editing of RNA" Proceedings of the working conference on Advanced visual interfaces, 2006, pp. 504-507


PseudoViewer

Han, K.; Lee, Y. & Kim, W. "PseudoViewer: automatic visualization of RNA pseudoknots," Bioinformatics, 2002, 18, S321-S328
Han, K. & Byun, Y. "PseudoViewer 2: visualization of RNA pseudoknots of any type," Nucleic Acids Research, 2003, 31


RnaFold

Hofacker, I.L.; Fontana, W.; Stadler, P.F.; Bonhoeffer, L.S.; Tacker, M. & Schuster, P. "Fast Folding and Comparison of RNA Secondary Structures," Monatsh.Chem., 1994, 125, 167-188


RnaMLView

Yang, H.; Jossinet, F.; Leontis, N.; Chen, L.; Westbrook, J.; Berman, H. & Westhof, E. "Tools for the automatic identification and classification of RNA base pairs," Nucleic Acids Research, 2003, 31, 3450-3460


RnaViz

Rijk, P.D. & Wachter, R.D. "RnaViz, a program for the visualisation of RNA secondary structure," Nucleic Acids Research, 1997, 25, 4679 - 4684
Rijk, P.D.; Wuyts, J. & Wachter, R.D. "RnaViz 2: an improved representation of RNA secondary structure," Bioinformatics, 2003, 19, 299-300


XRna